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TremaGene : tremabrowse

 News
[Aug.7.2017]   
A Postdoctoral Research Associate position is avaiable in the Mitreva Lab! Follow the link for details!

[June.7.2017]   
Bioinformatics Workshop for Helminth Genomics (2015) class materials now freely available!

[May.11.2017]   
NTDs get some well deserved coverage outside the usual channels: Financial Times Special Report: Neglected Tropical Diseases





TremaBrowse
TremaBrowse is a collection of trematode genomes annotated with gene predictions and displayed using the GBrowse interface. Gene names are those assigned by the various gene calling mechanisms employed during gene prediction and may be subject to change. Minimal annotation is made available in the gene list using either final gene product information as annotated by the BER pipeline, or information derived from WU-BLAST mappings to NR using a post-alignment cutoff of 35 bits + 55% identity.



Annotated genomes:
(last updated 06-16-17)
Project Species information Gene prediction software GBrowse annotations
*Fasciola hepatica PRJNA179522 F. hepatica TaxBrowser at NCBI MAKER with BER annotation Gene list
*addition of annotated snp track in progress

 
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