SiteMap
TremaGene : tremablast

 News
[Apr.21.2021]   
New job listing! (click for details)
[Jan.24.2019]   
Amazon awards research credit to support Helminth.net!
[July.10.2018]   
Trematode.net is now hosted on Amazon!




TremaBLAST - Map your sequence to our Trematode protein database collection


Blast your sequence versus Trematode gene and transcript collections

TremaBLAST is used to search for your sequence(s) of interest amongst a user defined set of protein sequences representing the genesets of our hosted trematode organisms (that have genesets available). Databases may include the protein products of predicted and/or final genes from draft and/or finished genomic assemblies. Where multiple isoforms were predicted, the TremaBLAST database will only utilize the longest isoform per gene loci.

Gene names reported can be looked up directly in TremaGene, and are also detailed in the TremaGene FAQ.

A Note on TremaBLAST

The TremaBLAST pages use WU-BLAST 2.0 (Gish, W. 1994-2002). Washington University BLAST (WU-BLAST) version 2.0 is a powerful software package for gene and protein identification, using sensitive and selective similarity searches of protein and nucleotide sequence databases. The feature list for WU-BLAST 2.0 is large, please visit http://blast.wustl.edu/ for more information on this software package

Setup your BLAST here:
TremaBlast is OFFLINE for software update

 
  Trematode.net v1.0(AWS)     Copyright Statement
  User support forum  Trematode.net User Support
Webmaster                     jmartin@wustl.edu
The Genome Institute Washington University School of Medicine